vndk-def: Add --check-apk to check-dep command

This commit adds --check-apk to check-dep command to discover the
JNI dependencies in the APK files.

Test: ./vndk_definition_tool.p check-dep --check-apk \
  --system ...  --vendor ... --tag-file ... --module-info ...

Bug: 71880346
Change-Id: Ie464f3e6f96ebc0c4d9dcdfc5513002f555e758b